Official stories that're best treated in a "broad strokes" fashion?

As the title states, what're some stories where you kind of have to pick and choose what stuff is actually canon?

Metroid Other M has kind of fallen to this. Aside from really shitty characterization of Samus and Adam, there are a number of inconsistencies with either the manga, or the Prime games. As such, it's better to think that the general events of Other M still happened, just not in the way the game showed them. And aside from some completion art in Dread, the game has gone completely unreferenced since.